The following services will be purchased in two separate lots where providers can differ. Firstly, high-throughput sequencing for Whole Genome sequencing (WGS), Whole Genome Bisulfite Sequencing (WGBS), and RNA sequencing (RNA-seq) services. Secondly, circulating tumor DNA (ctDNA) sequencing services including DNA extraction, and high-throughput sequencing for whole-genome shallow sequencing (sWGS) and whole-exome sequencing (WES). All services should include quality control measurements and library preparations.
In the first part, estimated samples per year for WGS is 100-200, for RNA-seq 100-150 and for WGBS ~50. These samples are provided as extracted DNA and RNA. In the second part, we estimate to sequence ~80 samples for sWGS and ~40 for WES per year. Since these plasma samples are provided before extraction and may have too low amount of DNA, extraction is needed for ~150 samples per year.
The study is part of an ongoing EU project DECIDER led by Professor Sampsa Hautaniemi at the University of Helsinki. The project builds on existing data received from previous sequencing for this project which was produced according to the procedures described in the invitation to tender section VI.4) Other information: "Content of the services", and thus the sequencing data purchased from the service provider(s) should be compatible with these data types.
An agreement starting in July 2023 and lasting 31 months will be signed of the services. One or many services will be ordered in smaller batches. For each order a separate sub-agreement needs to be prepared and signed to define requested services, number of samples, up-to-date prices and deadline for data delivery.
Määräaika
Tarjousten vastaanottamisen määräaika oli 2023-04-17.
Hankinta julkaistiin 2023-03-17.
Toimittajat
Seuraavat toimittajat mainitaan hankintapäätöksissä tai muissa hankinta-asiakirjoissa:
Kohde Hankinnan laajuus
Otsikko: Next generation sequencing services for DECIDER
Tuotteet/palvelut: Lääketieteellisten laboratorioiden palvelut📦
Lyhyt kuvaus:
“The following services will be purchased in two separate lots where providers can differ. Firstly, high-throughput sequencing for Whole Genome sequencing...”
Lyhyt kuvaus
The following services will be purchased in two separate lots where providers can differ. Firstly, high-throughput sequencing for Whole Genome sequencing (WGS), Whole Genome Bisulfite Sequencing (WGBS), and RNA sequencing (RNA-seq) services. Secondly, circulating tumor DNA (ctDNA) sequencing services including DNA extraction, and high-throughput sequencing for whole-genome shallow sequencing (sWGS) and whole-exome sequencing (WES). All services should include quality control measurements and library preparations.
In the first part, estimated samples per year for WGS is 100-200, for RNA-seq 100-150 and for WGBS ~50. These samples are provided as extracted DNA and RNA. In the second part, we estimate to sequence ~80 samples for sWGS and ~40 for WES per year. Since these plasma samples are provided before extraction and may have too low amount of DNA, extraction is needed for ~150 samples per year.
The study is part of an ongoing EU project DECIDER led by Professor Sampsa Hautaniemi at the University of Helsinki. The project builds on existing data received from previous sequencing for this project which was produced according to the procedures described in the invitation to tender section VI.4) Other information: "Content of the services", and thus the sequencing data purchased from the service provider(s) should be compatible with these data types.
An agreement starting in July 2023 and lasting 31 months will be signed of the services. One or many services will be ordered in smaller batches. For each order a separate sub-agreement needs to be prepared and signed to define requested services, number of samples, up-to-date prices and deadline for data delivery.
Näytä lisää
Arvioitu arvo ilman arvonlisäveroa: EUR 490 000 💰
Tietoa eristä
Tarjouksia voidaan jättää kaikista eristä
1️⃣ Hankinnan laajuus
Otsikko:
“Lot 1. Library preparation and high-throughput sequencing for whole-genome, whole-genome bisulfite and RNA sequencing” Otsikko
Erän tunnistenumero: 1
Kuvaus
Lisätuotteet/palvelut: Lääketieteellisten laboratorioiden palvelut📦
Suorituspaikka: Helsinki-Uusimaa🏙️
Hankinnan kuvaus:
“The following services will be purchased. High-throughput sequencing for Whole Genome sequencing (WGS), Whole Genome Bisulfite Sequencing (WGBS), and RNA...”
Hankinnan kuvaus
The following services will be purchased. High-throughput sequencing for Whole Genome sequencing (WGS), Whole Genome Bisulfite Sequencing (WGBS), and RNA sequencing (RNA-seq) services. All services should include quality control measurements and library preparations.
Estimated sample number per year for WGS is 100-200 and RNA-seq are 100-150 per year and for WGBS ~50 per year. These samples are provided as extracted DNA and RNA.
The study is part of an ongoing EU project DECIDER led by Professor Sampsa Hautaniemi at the University of Helsinki. The project builds on existing data received from previous sequencing for this project which was produced according to the procedures described in the invitation to tender section VI.4) Other information: "Content of the services", and thus the sequencing data purchased from the service provider(s) should be compatible with these data types.
An agreement starting at July 2023 and lasting 31 months will be signed of the services. One or many services will be ordered in smaller batches. For each order a separate sub-agreement needs to be prepared and signed to define requested services, number of samples, up-to-date prices and deadline for data delivery.
Näytä lisää Myöntämisperusteet
Hinta ei ole ainoa myöntämisperuste, ja kaikki perusteet ilmoitetaan ainoastaan hankinta-asiakirjoissa
Hankinnan laajuus
Arvioitu kokonaisarvo ilman arvonlisäveroa: EUR 400 000 💰
Sopimuksen, puitesopimuksen tai dynaamisen hankintajärjestelmän kesto
Jäljempänä oleva aikataulu on ilmaistu kuukausina.
Kuvaus
Kesto: 31
Hankinnan laajuus
Tietoa Euroopan unionin rahastoista: European Union project DEDICER, grant agreement no 965193.
2️⃣ Hankinnan laajuus
Otsikko:
“Lot 2. DNA extraction, quality control, library preparation and high-throughput sequencing of ctDNA-samples for sWGS and WES” Otsikko
Erän tunnistenumero: 2
Kuvaus
Hankinnan kuvaus:
“The following services will be purchased. Circulating tumor DNA (ctDNA) sequencing services including DNA extraction, and high-throughput sequencing for...”
Hankinnan kuvaus
The following services will be purchased. Circulating tumor DNA (ctDNA) sequencing services including DNA extraction, and high-throughput sequencing for whole-genome shallow sequencing (sWGS) and whole-exome sequencing (WES). All services should include quality control measurements and library preparations.
We estimate to sequence ~80 samples for sWGS and ~40 for WES. Since these plasma samples are provided before extraction and may have too low amount of DNA, extraction is needed for ~150 samples per year.
The study is part of an ongoing EU project DECIDER led by Professor Sampsa Hautaniemi at the University of Helsinki. The project builds on existing data received from previous sequencing for this project which was produced according to the procedures described in the invitation to tender section VI.4) Other information: "Content of the services", and thus the sequencing data purchased from the service provider(s) should be compatible with these data types, mainly NEBNext Ultra II DNA Library Prep Kit and Novaseq 6000 sequencing.
An agreement starting at July 2023 and lasting 31 months will be signed of the services. One or many services will be ordered in smaller batches. For each order a separate sub-agreement needs to be prepared and signed to define requested services, number of samples, up-to-date prices and deadline for data delivery.
Näytä lisää Hankinnan laajuus
Arvioitu kokonaisarvo ilman arvonlisäveroa: EUR 90 000 💰
Menettely Toimenpiteen tyyppi
Avoin menettely
Hallinnolliset tiedot
Tarjousten tai osallistumishakemusten vastaanottamisen määräaika: 2023-04-17
14:00 📅
Kielet, joilla tarjoukset tai osallistumishakemukset voidaan jättää: englanti 🗣️
Jäljempänä oleva aikataulu on ilmaistu kuukausina.
Vähimmäisaika, jonka kuluessa tarjoajan on pidettävä tarjous voimassa: 6
Tarjousten avaamista koskevat ehdot: 2023-04-17
14:01 📅
Täydentävät tiedot Alkuperäisen ilmoituksen viite
Ilmoituksen numero EUVL:ssä S: 2023/S 058-170281
Muutokset Alkuperäiseen ilmoitukseen korjattava teksti
Jakson numero: IV.2.2
Muutettavan tekstin paikka: Time limit for receipt of information, tenders or requests to participate
Vanha arvo
Päivämäärä: 2023-04-17 📅
Uusi arvo
Päivämäärä: 2023-04-25 📅
Alkuperäiseen ilmoitukseen korjattava teksti
Jakson numero: IV.2.7
Muutettavan tekstin paikka: Conditions for opening of tenders
Vanha arvo
Päivämäärä: 2023-04-17 📅
Uusi arvo
Päivämäärä: 2023-04-25 📅
Lähde: OJS 2023/S 077-231769 (2023-04-14)
Lisätietoilmoitus (2023-04-19)
Muutokset Alkuperäiseen ilmoitukseen korjattava teksti
Jakson numero: IV.2.2
Muutettavan tekstin paikka: Time limit for receipt of information, tenders or requests to participate
Vanha arvo
Päivämäärä: 2023-04-25 📅
Uusi arvo
Päivämäärä: 2023-04-28 📅
Alkuperäiseen ilmoitukseen korjattava teksti
Jakson numero: IV.2.7
Muutettavan tekstin paikka: Conditions for opening of tenders
Vanha arvo
Päivämäärä: 2023-04-25 📅
Uusi arvo
Päivämäärä: 2023-04-28 📅
Muut lisätiedot
“- Removed the uploading requirement from the individual criteria on the scoring table
- Added a section to both lots where the document used in the quality...”
- Removed the uploading requirement from the individual criteria on the scoring table
- Added a section to both lots where the document used in the quality comparison can be uploaded
- Correction of the scoring info on page 16 to match the scoring table
- Correction of scoring: delivery for WGS to be 4 instead of 5
Näytä lisää
Lähde: OJS 2023/S 080-241490 (2023-04-19)
Ilmoitus tehdystä sopimuksesta (2023-10-13) Kohde Hankinnan laajuus
Lyhyt kuvaus:
“The following services will be purchased in two separate lots where providers can differ. Firstly, high-throughput sequencing for Whole Genome sequencing...”
Lyhyt kuvaus
The following services will be purchased in two separate lots where providers can differ. Firstly, high-throughput sequencing for Whole Genome sequencing (WGS), Whole Genome Bisulfite Sequencing (WGBS), and RNA sequencing (RNA-seq) services. Secondly, circulating tumor DNA (ctDNA) sequencing services including DNA extraction, and high-throughput sequencing for whole-genome shallow sequencing (sWGS) and whole-exome sequencing (WES). All services should include quality control measurements and library preparations.
In the first part, estimated samples per year for WGS is 100-200, for RNA-seq 100-150 and for WGBS ~50. These samples are provided as extracted DNA and RNA. In the second part, we estimate to sequence ~80 samples for sWGS and ~40 for WES per year. Since these plasma samples are provided before extraction and may have too low amount of DNA, extraction is needed for ~150 samples per year.
The study is part of an ongoing EU project DECIDER led by Professor Sampsa Hautaniemi at the University of Helsinki. The project builds on existing data received from previous sequencing for this project which was produced according to the procedures described in the invitation to tender section VI.4) Other information: "Content of the services", and thus the sequencing data purchased from the service provider(s) should be compatible with these data types.
Näytä lisää
Hankinnan kokonaisarvo (ilman arvonlisäveroa): EUR 490 000 💰
Tietoa eristä
Tämä sopimus on jaettu osiin ✅ Myöntämisperusteet
Laatukriteeri (nimi): Detailed description of library and/or sequencing design
Laatukriteeri (painotus): 21
Laatukriteeri (nimi): Amount and quality of data guaranteed
Laatukriteeri (painotus): 17
Laatukriteeri (nimi): Limitations etc.
Laatukriteeri (painotus): 7
Laatukriteeri (nimi): Delivery
Laatukriteeri (painotus): 9
Laatukriteeri (nimi): Sample requirements
Laatukriteeri (painotus): 6
Hinta (painotus): 40
Laatukriteeri (nimi): Price
Laatukriteeri (painotus): 40
Laatukriteeri (nimi): Detailed description of DNA extraction, library and/or sequencing design
Laatukriteeri (painotus): 23
Laatukriteeri (painotus): 8
Menettely Hallinnolliset tiedot
Tätä menettelyä koskeva aiempi julkaisu: 2023/S 058-170281
Sopimuksen tekeminen
1️⃣
Erän tunnistenumero: 1
Otsikko:
“Lot 1. Library preparation and high-throughput sequencing for whole-genome, whole-genome bisulfite and RNA sequencing”
Sopimuksen tekopäivä: 2023-10-05 📅
Tietoa tarjouskilpailuista
Saatujen tarjousten määrä: 8
Pk-yrityksiltä saatujen tarjousten määrä: 4
Sähköisesti vastaanotettujen tarjousten määrä: 8
Toimeksisaajan nimi ja osoite
Nimi: Novogene uk company limited
Kansallinen rekisterinumero: GB273975163
Postiosoite: 25 Cambridge Science Park CAMBRIDGE
Postitoimipaikka: Cambridge
Maa: Iso-Britannia 🇬🇧
Alue: United Kingdom 🏙️
Toimeksisaaja on pk-yritys
Tiedot sopimuksen/erän arvosta (ilman alv:tä)
Hankintasopimuksen/kiinteistön arvioitu kokonaisarvo: EUR 400 000 💰
Sopimuksen/osuuden kokonaisarvo: EUR 400 000 💰
2️⃣
Erän tunnistenumero: 2
Otsikko:
“Lot 2. DNA extraction, quality control, library preparation and high-throughput sequencing of ctDNA-samples for sWGS and WES”
Sopimuksen tekopäivä: 2023-09-04 📅
Toimeksisaajan nimi ja osoite
Nimi: Biomarker Technologies BMK GmbH
Kansallinen rekisterinumero: DE353057045
Postiosoite: BioZ, Johann-Krane Weg 42
Postitoimipaikka: Münster Germany
Postinumero: 48149
Maa: Saksa 🇩🇪
Alue: Deutschland 🏙️
Toimeksisaaja on pk-yritys ✅ Tiedot sopimuksen/erän arvosta (ilman alv:tä)
Hankintasopimuksen/kiinteistön arvioitu kokonaisarvo: EUR 90 000 💰
Sopimuksen/osuuden kokonaisarvo: EUR 90 000 💰
Lähde: OJS 2023/S 201-630565 (2023-10-13)