Next-generation Sequencing Services 2018-2020 (2021, 2022)

National Institute for Health and Welfare

National Institute for Health and Welfare (later referred to as "THL" or "Customer") invites you to submit a tender according to this Invitation to tender and its Annexes for Next-generation Sequencing Services. The Service provider can submit a tender for one or more procurement sub-areas. Each procurement sub-area will be evaluated independently.
— Sub-area A: Bacterial and fungal DNA Amplicon sequencing
— Sub-area B: Bacterial DNA Extraction and whole genome sequencing.

Määräaika

Tarjousten vastaanottamisen määräaika oli 2018-07-06. Hankinta julkaistiin 2018-05-31.

Toimittajat

Seuraavat toimittajat mainitaan hankintapäätöksissä tai muissa hankinta-asiakirjoissa:

Kuka? Mitä? Missä?
Hankintojen historia
Päivämäärä Asiakirja
2018-05-31 hankintailmoitus
2019-11-05 Ilmoitus tehdystä sopimuksesta
hankintailmoitus (2018-05-31)
Kohde
Hankinnan laajuus
Otsikko: Tutkimuslaboratorioiden palvelut
Viitenumero: THL/649/7.01.04/2018
Lyhyt kuvaus:
National Institute for Health and Welfare (later referred to as "THL" or "Customer") invites you to submit a tender according to this Invitation to tender and its Annexes for Next-generation Sequencing Services. The Service provider can submit a tender for one or more procurement sub-areas. Each procurement sub-area will be evaluated independently. — Sub-area A: Bacterial and fungal DNA Amplicon sequencing — Sub-area B: Bacterial DNA Extraction and whole genome sequencing.
Näytä lisää
Ilmoituksen metatiedot
Alkukieli: englanti 🗣️
Asiakirjatyyppi: hankintailmoitus
Sopimuksen luonne: Palvelut
Asetus: Euroopan unioni ja WTO-maat
Yhteinen hankintanimikkeistö (CPV)
Koodi: Tutkimuslaboratorioiden palvelut 📦
Lisä-CPV-koodi: Tutkimuslaboratorioiden palvelut 📦
Suorituspaikka
NUTS-alue: Suomi/Finland 🏙️

Menettely
Menettelyn tyyppi: Avoin menettely
Tarjouksen tyyppi: Tarjous koskee kaikkia eriä
Myöntämisperusteet
Kokonaistaloudellisesti edullisin tarjous

Hankintaviranomainen
Tunnistetiedot
Maa: Suomi 🇫🇮
Hankintaviranomaisen tyyppi: Kansallinen tai liittovaltiotason virasto/laitos
Hankintaviranomaisen nimi: National Institute for Health and Welfare
Postiosoite: PL 30
Postinumero: 00271
Postitoimipaikka: Helsinki
Yhteystiedot
Internetosoite: https://thl.fi/en/web/thlfi-en 🌏
Sähköposti: jenni.tiainen@thl.fi 📧
Asiakirjojen URL-osoite: https://hanki.tarjouspalvelu.fi/hanki 🌏
Osallistumisen URL-osoite: https://hanki.tarjouspalvelu.fi/hanki?id=180477&tpk=38d8fde0-5aa1-4b19-9f6f-e76f99f4b1ab 🌏

Viite
Päivämäärät
Lähetyspäivä: 2018-05-31 📅
Tarjousten jättämisen määräaika: 2018-07-06 📅
Julkaisupäivä: 2018-06-01 📅
Aloituspäivä: 2018-08-01 📅
Loppupäivä: 2020-07-31 📅
2020-07-30 📅
Tunnisteet
Ilmoituksen numero: 2018/S 103-235659
EUVL-S-numero: 103

Kohde
Hankinnan laajuus
Lyhyt kuvaus:
National Institute for Health and Welfare (later referred to as "THL" or "Customer") invites you to submit a tender according to this Invitation to tender and its Annexes for Next-generation Sequencing Services. The Service provider can submit a tender for one or more procurement sub-areas. Each procurement sub-area will be evaluated independently.
Näytä lisää
— Sub-area A: Bacterial and fungal DNA Amplicon sequencing
— Sub-area B: Bacterial DNA Extraction and whole genome sequencing.
Osan nimi: Sub-area A: Bacterial and Fungal DNA Amplicon Sequencing
Osan numero: 1.
Lyhyt kuvaus:
THL has prepared or will prepare DNA and RNA extracts of samples from natural and man-made environments and humans for microbiological characterization. The microbiome targets include primarily bacteria (16S rRNA) and fungi (ITS sequence), but may also include eg. archaea and protozoa (18S rRNA). Amplicon sequencing service (complete service from nucleic acids): We will ship the nucleic acids (DNA and/or cDNA samples) to be sequenced, typically in 15-50 μl volume, to the service provider. We will ship the samples in several batches. A typical batch size will be 100 to 500 samples, but batches may be also smaller or larger on occasion. We expect the service provider to store the remainder of the sample batch for possible later sequencing up to one year and/or communicate with THL returning unused nucleic acids. We also expect the service provider to discuss in detail PCR and sequencing conditions for each batch to be processed beforehand. Post PCR and prior to sequencing, we request agarose gel pictures with sample identification that are used to decide on success of PCR amplification of the sample DNA. The exact total number of samples or the total number of batches per each amplicon target (bacteria, fungi, others) is not known. All batches will contain at least one negative and one positive control (mock community) sample. In total, we are anticipating to request bacterial and fungal amplicon sequencing service of several batches between 100 and 500 samples within the first 12 months, and similar throughput for following years.
Näytä lisää
Uudistusten kuvaus:
The procurement contains 2 option years to extend the contract. The Customer can extend the contract 1 year at a time. The Customer will supply a written notification of extension before the end of the calendar year of the previous contract or option period.
Näytä lisää
Osan nimi: Sub-area B: Bacterial DNA Extraction and Whole Genome Sequencing
Osan numero: 2.
Lyhyt kuvaus:
Bacterial DNA extraction and whole genome sequencing service (complete service from nucleic acids or from a bacterial strain) THL will purchase both bacterial DNA extraction and whole genome sequencing service or just the latter depending on our needs. Bacterial cultures or bacterial DNA extracts of bacterial isolates from clinical human cases will be produced by the customer. The bacterial cultures sent for DNA extraction belong to biosafety level 2 or 2+ (BSL-2 or BSL-2+), e.g. Streptococcus pneumoniae. The bacterial cultures will be inactivated before shipping. The total amount of samples to be sequenced (DNA samples and bacterial strains) is 700-2000 per contract year. The amount of DNA samples is approximately 200- 1000 per contract year and the amount of inactivated bacterial strains is approximately 500-1000 per contract year. We will ship the DNA samples to be sequenced, typically in 30-70 μl volume, to the service provider. The non-viable pelleted bacterial cultures will be shipped in safe-lock tubes to the service provider. We will preferably grow the bacterial cultures on agar plates and under the conditions suitable for each bacterial species. We will ship the DNA samples/bacterial cultures in several batches. A typical batch size will be 96 or 192 samples, but batches may be also smaller on occasion. THL uses Illumina sequencing technology in house and the sequence data produced by the service provider must be comparable with the sequence data obtained in THL. The requirements for the data produced by the service provider are specified in the minimum requirements section. The sequence data will be used for microbiological strain typing and characterization.
Näytä lisää
Uudistusten kuvaus:
The procurement contains 2 option years to extend the contract. The Customer can extend the contract 1 year at a time. The customer will supply a written notification of extension before the end of the calendar year of the previous contract or option period.
Näytä lisää

Oikeudelliset, taloudelliset, rahoitukselliset ja tekniset tiedot
Osallistumisehdot
Kelpoisuus harjoittaa ammattitoimintaa:
Please see Invitation to tender and the European single procurement document (ESPD).
Sopimuksen toteuttaminen
Sopimuksen täytäntöönpanoehdot:
Please see Invitation to tender and the European single procurement document (ESPD).

Menettely
Tarjousten vastaanottoaika: 12:00
Kielet, joilla tarjoukset tai osallistumishakemukset voidaan jättää: englanti 🗣️
Tarjouksen voimassaoloaika: 3 kuukautta
Tarjousten avauspäivä: 2018-07-10 📅
Tarjousten avausaika: 09:00
Myöntämisperusteet
Laatukriteeri (nimi): Quality
Laatukriteeri (painotus): 30
Hinnan painoarvo: 70

Hankintaviranomainen
Tunnistetiedot
Kansallinen rekisterinumero: 2229500-6
Yhteystiedot
Asiakirjojen URL-osoite: https://hanki.tarjouspalvelu.fi/hanki 🌏

Täydentävät tiedot
Arvostelurunko
Nimi: The Market Court
Postiosoite: Radanrakentajantie 5
Postitoimipaikka: Helsinki
Postinumero: 00520
Maa: Suomi 🇫🇮
Sähköposti: markkinaoikeus@oikeus.fi 📧
Faksi: +358 295643314 📠
Internetosoite: http://www.markkinaoikeus.fi/en/index.html 🌏
Lähde: OJS 2018/S 103-235659 (2018-05-31)
Ilmoitus tehdystä sopimuksesta (2019-11-05)
Kohde
Hankinnan laajuus
Lyhyt kuvaus:
National Institute for Health and Welfare (later referred to as ‘THL’ or ‘Customer’) invites you to submit a tender according to this Invitation to tender and its Annexes for next-generation sequencing services. The service provider can submit a tender for one or more procurement sub-areas. Each procurement sub-area will be evaluated independently. Sub-area A: Bacterial and Fungal DNA Amplicon sequencing; Sub-area B: Bacterial DNA extraction and whole genome sequencing.
Näytä lisää
Hankinnan kokonaisarvo: 540 000 EUR 💰
Ilmoituksen metatiedot
Asiakirjatyyppi: Ilmoitus tehdystä sopimuksesta

Menettely
Tarjouksen tyyppi: Ei sovelleta

Viite
Päivämäärät
Lähetyspäivä: 2019-11-05 📅
Julkaisupäivä: 2019-11-06 📅
Tunnisteet
Ilmoituksen numero: 2019/S 214-526172
Viittaa ilmoitukseen: 2018/S 103-235659
EUVL-S-numero: 214

Kohde
Hankinnan laajuus
Lyhyt kuvaus:
National Institute for Health and Welfare (later referred to as ‘THL’ or ‘Customer’) invites you to submit a tender according to this Invitation to tender and its Annexes for next-generation sequencing services. The service provider can submit a tender for one or more procurement sub-areas. Each procurement sub-area will be evaluated independently.
Näytä lisää
Sub-area A: Bacterial and Fungal DNA Amplicon sequencing;
Sub-area B: Bacterial DNA extraction and whole genome sequencing.
THL has prepared or will prepare DNA and RNA extracts of samples from natural and man-made environments and humans for microbiological characterization. The microbiome targets include primarily bacteria (16S rRNA) and fungi (ITS sequence), but may also include e.g. archaea and protozoa (18S rRNA). The exact total number of samples or the total number of batches per each amplicon target (bacteria, fungi, others) is not known. All batches will contain at least one negative and one positive control (mock community) sample. In total, we are anticipating to request bacterial and fungal amplicon sequencing service of several batches between 100 and 500 samples within the first 12 months, and similar throughput for following years.
Näytä lisää
Bacterial DNA extraction and whole genome sequencing service (complete service from nucleic acids or from a bacterial strain) THL will purchase both bacterial DNA extraction and whole genome sequencing service or just the latter depending on our needs. Bacterial cultures or bacterial DNA extracts of bacterial isolates from clinical human cases will be produced by the customer. The bacterial cultures sent for DNA extraction belong to biosafety Level 2 or 2+ (BSL-2 or BSL-2+), e.g. Streptococcus pneumoniae. The bacterial cultures will be inactivated before shipping. THL uses Illumina sequencing technology in house and the sequence data produced by the service provider must be comparable with the sequence data obtained in THL. The requirements for the data produced by the service provider are specified in the minimum requirements section. The sequence data will be used for microbiological strain typing and characterization.
Näytä lisää

Menettely
Myöntämisperusteet
Hinta (painotus): 70

Sopimuksen tekeminen
Sopimuksen tekemispäivä: 2019-01-21 📅
Nimi: Macrogen Inc.
Kansallinen rekisterinumero: 208-81-24115
Postitoimipaikka: Amsterdam
Maa: Alankomaat 🇳🇱
Extra-Regio NUTS 1 🏙️
Hankinnan kokonaisarvo: 140 000 EUR 💰
Sopimuksen tekemispäivä: 2019-01-10 📅
Nimi: LGC Genomics GMbH
Kansallinen rekisterinumero: DE811547771
Postitoimipaikka: Berlin
Maa: Saksa 🇩🇪
Hankinnan kokonaisarvo: 400 000 EUR 💰
Tietoa tarjouskilpailuista
Saatujen tarjousten määrä: 8
Lähde: OJS 2019/S 214-526172 (2019-11-05)
Uudet hankinnat asiaan liittyvissä luokissa 🆕
Aiheeseen liittyvät haut 🔍
Alue:
Suomi/Finland Manner-Suomi Helsinki-Uusimaa Extra-Regio NUTS 1
Toimittajat:
LGC Genomics GmbH Macrogen Inc.
Tuotteet/palvelut:
Tutkimus- ja kehityspalvelut ja niihin... Tutkimuspalvelut ja kokeelliset kehityspalvelut Tutkimuspalvelut Tutkimuslaboratorioiden palvelut